2F97

Effector Binding Domain of BenM (crystals generated from high pH conditions)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		9		PEG 8000, TAPS, LiCl, imidazole, tris, NaCl, cis,cis-muconate, glycerol, pH 9, Microbatch under oil

Crystal Properties
Matthews coefficient	Solvent content
4.36	71.77

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 70.048	α = 90
b = 70.048	β = 90
c = 187.683	γ = 90

Symmetry
Space Group	P 43 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH			M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-BM	.97935	APS	19-BM

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.2	70.014	99.9	0.063	65.96	20.9	24724	24724			43.75363

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.2	2.28	99.9	99.9	0.769	5.92		2381

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 2F6G	2.2	70.014	23294	23294	1218	99.582	0.1779	0.1779	0.1763	0.2094	RANDOM	42.296

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.223			0.223		-0.447

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.267
r_dihedral_angle_4_deg	14.525
r_dihedral_angle_3_deg	12.528
r_dihedral_angle_1_deg	4.812
r_scangle_it	3.242
r_scbond_it	2.099
r_mcangle_it	1.072
r_angle_refined_deg	0.915
r_mcbond_it	0.515
r_scangle_other	0.416
r_angle_other_deg	0.309
r_nbtor_refined	0.295
r_symmetry_vdw_other	0.217
r_nbd_refined	0.162
r_symmetry_vdw_refined	0.152
r_symmetry_hbond_refined	0.1
r_xyhbond_nbd_refined	0.099
r_scbond_other	0.099
r_nbd_other	0.097
r_nbtor_other	0.075
r_chiral_restr	0.057
r_mcangle_other	0.023
r_bond_refined_d	0.007
r_gen_planes_refined	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1722
Nucleic Acid Atoms
Solvent Atoms	252
Heterogen Atoms	44

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
MOLREP	phasing