2F6H

Myosin V cargo binding domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.52791.7 M Nacl, 6% PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 279K, pH 6.50
Crystal Properties
Matthews coefficientSolvent content
3.2361.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.78α = 90
b = 72.673β = 90
c = 167.982γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-03-27MMAD
21
31
41
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.220.82970.1068.95.462808017
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.22.2898.50.5324.14.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.25122808026672140893.20.2190.2170.25RANDOM32.63
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.110.22-1.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.253
r_dihedral_angle_4_deg18.573
r_dihedral_angle_3_deg18.079
r_dihedral_angle_1_deg5.165
r_scangle_it2.841
r_scbond_it1.86
r_mcangle_it1.42
r_angle_refined_deg1.313
r_mcbond_it1.233
r_angle_other_deg0.822
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.253
r_dihedral_angle_4_deg18.573
r_dihedral_angle_3_deg18.079
r_dihedral_angle_1_deg5.165
r_scangle_it2.841
r_scbond_it1.86
r_mcangle_it1.42
r_angle_refined_deg1.313
r_mcbond_it1.233
r_angle_other_deg0.822
r_nbd_refined0.195
r_symmetry_vdw_other0.193
r_nbtor_refined0.183
r_xyhbond_nbd_refined0.183
r_nbd_other0.162
r_symmetry_hbond_refined0.161
r_mcbond_other0.154
r_symmetry_vdw_refined0.091
r_nbtor_other0.087
r_chiral_restr0.081
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3162
Nucleic Acid Atoms
Solvent Atoms227
Heterogen Atoms

Software

Software
Software NamePurpose
d*TREKdata reduction
SOLVEphasing
REFMACrefinement
d*TREKdata scaling