2F69

Ternary complex of SET7/9 bound to AdoHcy and a TAF10 peptide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52931.89-2.04 M (NH4)2SO4, 0.1 M Bis TRIS pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties
Matthews coefficientSolvent content
3.1961.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.38α = 90
b = 83.38β = 90
c = 95.52γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 2102005-08-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID0.96863APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.329.141000.061711.269452894528-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.31.351000.5053.99.329356

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1O9S1.329.1439446389732473199.90.150080.150080.14880.17412RANDOM24.263
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.01-0.030.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.293
r_sphericity_free11.312
r_dihedral_angle_3_deg10.799
r_dihedral_angle_4_deg8.646
r_sphericity_bonded8.445
r_dihedral_angle_1_deg6.165
r_scangle_it6.06
r_scbond_it4.614
r_mcangle_it3.613
r_rigid_bond_restr2.815
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.293
r_sphericity_free11.312
r_dihedral_angle_3_deg10.799
r_dihedral_angle_4_deg8.646
r_sphericity_bonded8.445
r_dihedral_angle_1_deg6.165
r_scangle_it6.06
r_scbond_it4.614
r_mcangle_it3.613
r_rigid_bond_restr2.815
r_mcbond_it2.738
r_angle_refined_deg2.038
r_nbtor_refined0.315
r_symmetry_hbond_refined0.279
r_symmetry_vdw_refined0.27
r_xyhbond_nbd_refined0.26
r_nbd_refined0.231
r_chiral_restr0.169
r_bond_refined_d0.023
r_gen_planes_refined0.012
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2000
Nucleic Acid Atoms
Solvent Atoms472
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
d*TREKdata reduction
d*TREKdata scaling
MOLREPphasing