2EZX

SOLUTION STRUCTURE OF HUMAN BARRIER-TO-AUTOINTEGRATION FACTOR BAF, NMR, REGULARIZED MEAN STRUCTURE


SOLUTION NMR
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX600500
2BrukerDMX500600
NMR Refinement
MethodDetailsSoftware
SEE REMARK 3THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129 - 136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) MODIFIED TO INCORPORATE COUPLING CONSTANT (GARRETT ET AL. (1984) J.MAGN.RESON. SERIES B 104, 99 - 103), CARBON CHEMICAL SHIFT (KUSZEWSKI ET AL. (1995) J.MAGN.RESON. SERIES B 106, 92 - 96) RESTRAINTS, 1H CHEMICAL SHIFT RESTRAINTS (KUSZEWSKI ET AL. (1995) J.MAGN.RESON. SERIES B 107, 293-297; (1996) J.MAGN.RESON. SERIES B 112, 79-81), AND A CONFORMATIONAL DATABASE POTENTIAL (KUSZWESKI ET AL. (1996) PROTEIN SCI. 5, 1067-108 AND (1997) J.MAGN.RESON. 125, 171-177). THE 3D STRUCTURE OF THE 21 KDA BAF DIMER WAS SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR BASED ON 1655 EXPERIMENTAL RESTRAINTS (PER MONOMER): (A) INTRASUBUNIT: 288 SEQUENTIAL (|I-J|=1), 267 MEDIUM RANGE (1 < |I-J| >=5) AND 190 LONG RANGE (|I-J| >5) INTERRESIDUE, AND 7 INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS; 64 DISTANCE RESTRAINTS FOR 32 HYDROGEN BONDS; 257 TORSION ANGLE (84 PHI, 78 PSI, 60 CHI1 29 CHI2 AND 6 CHI3) RESTRAINTS; 66 THREE-BOND HN-HA COUPLING CONSTANT RESTRAINTS; 165 (87 CALPHA AND 78 CBETA) 13C SHIFT RESTRAINTS; 44 1H METHYL PROTON CHEMICAL SHIFTS; 259 DIPOLAR COUPLINGS (76 N-H, 76 CALPHA-C', 55 N-C' AND 52 HN-C'). (B) 48 INTERSUBUNIT INTERPROTON DISTANCE RESTRAINTS. RMS DEVIATIONS. BOND LENGTHS : 0.004931 BOND ANGLES : 0.543143 IMPROPER ANGLES : 0.551732 CDIH : 0.128297 NOE : 0.022087 COUP : 0.943946 13C SHIFTS RMS CA, CB (PPM): 1.04812, 1.20411 JHNHA RMS (HZ): 0.943946 0 DIPOLAR COUPLINGS NH CACO NCO HNCO RMS DIPOLAR (HZ): 0.421677 1.31903 0.483471 1.20095 1H METHYL SHIFTS: 0.118116 THE STRUCTURE IN THIS ENTRY IS THE RESTRAINED REGULARIZED MEAN STRUCTURE AND THE LAST NUMERIC COLUMN REPRESENTS THE RMS OF THE 40 INDIVIDUAL SIMULATED ANNEALING STRUCTURES FOUND IN PDB ENTRY 2EZY ABOUT THE MEAN COORDINATE POSITIONS. THE LAST NUMERIC COLUMN IN THE INDIVIDUAL SA STRUCTURES HAS NO MEANING.CNS
NMR Ensemble Information
Conformer Selection CriteriaREGULARIZED MEAN STRUCTURE
Conformers Calculated Total Number40
Conformers Submitted Total Number1
Representative Model1 (n/a)
Additional NMR Experimental Information
DetailsTHE STRUCTURE IN THIS ENTRY IS THE RESTRAINED REGULARIZED MEAN STRUCTURE.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN
2structure solutionCNS MODIFIEDMODIFIED