2EXD
The solution structure of the C-terminal domain of a nfeD homolog from Pyrococcus horikoshii
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1mM protein U-15N, 25mM phosphate buffer NA, 300mM NACL, 1mM EDTA, 95% H2O, 5% D2O | 95% H2O/5% D2O | 300mM | 5.0 | 1 atm | 298 | |
2 | 3D_13C-separated_NOESY | 0.7mM protein U-15N,13C, 25mM phosphate buffer NA, 300mM NACL, 1mM EDTA, 95% H2O, 5% D2O | 95% H2O/5% D2O | 300mM | 5.0 | 1 atm | 298 | |
3 | HNHA | 0.7mM protein U-15N,13C, 25mM phosphate buffer NA, 300mM NACL, 1mM EDTA, 95% H2O, 5% D2O | 95% H2O/5% D2O | 300mM | 5.0 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Varian | INOVA | 900 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, rigid body restrained molecular dynamics, dihedral angle molecular dynamics | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.0.17 | Peter Guntert |
2 | collection | XwinNMR | 3.5 | Bruker co. |
3 | processing | NMRPipe | 2.3 | F. Delaglio |
4 | data analysis | Sparky | 3.106 | Thomas Goddard |
5 | refinement | CYANA | 2.0.17 | Peter Guntert |