2EV3

Structure of Rv1264N, the regulatory domain of the mycobacterial adenylyl cylcase Rv1264, at pH 5.3


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.3291PEG 400, sodium acetate, calcium acetate, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.141.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 120.403α = 90
b = 52.976β = 133.73
c = 89.399γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-03-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.934ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.684599.70.0776.45.7116341159390.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.682.8299.70.361.93.61665

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.6840116341103855199.660.230840.230840.229270.26517RANDOM79.249
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.775.3-3.597.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.896
r_dihedral_angle_4_deg16.042
r_dihedral_angle_3_deg15.832
r_scangle_it8.287
r_scbond_it5.5
r_dihedral_angle_1_deg4.422
r_angle_other_deg3.269
r_mcangle_it2.883
r_mcbond_it2.474
r_angle_refined_deg0.957
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.896
r_dihedral_angle_4_deg16.042
r_dihedral_angle_3_deg15.832
r_scangle_it8.287
r_scbond_it5.5
r_dihedral_angle_1_deg4.422
r_angle_other_deg3.269
r_mcangle_it2.883
r_mcbond_it2.474
r_angle_refined_deg0.957
r_mcbond_other0.503
r_symmetry_vdw_other0.324
r_nbd_other0.241
r_nbd_refined0.186
r_symmetry_vdw_refined0.178
r_nbtor_refined0.154
r_xyhbond_nbd_refined0.112
r_nbtor_other0.098
r_chiral_restr0.058
r_symmetry_hbond_refined0.046
r_bond_refined_d0.007
r_gen_planes_refined0.002
r_gen_planes_other0.001
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2819
Nucleic Acid Atoms
Solvent Atoms22
Heterogen Atoms40

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing