2CEU

Despentapeptide insulin in acetic acid (pH 2)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1220 % ACETIC ACID, 0.05 M SODIUM SULPHATE, PH 2
Crystal Properties
Matthews coefficientSolvent content
2.245

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.152α = 90
b = 58.174β = 90
c = 54.797γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATEMARRESEARCH2002-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8325980.04313.990142
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.83940.07173.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2-ZINC INSULIN1.841.13841342398.10.1740.1720.211RANDOM19.59
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.380.15-0.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.886
r_dihedral_angle_3_deg12.433
r_dihedral_angle_4_deg8.13
r_dihedral_angle_1_deg7.161
r_scangle_it4.325
r_scbond_it3.616
r_mcangle_it2.232
r_mcbond_it1.822
r_angle_refined_deg1.49
r_angle_other_deg0.818
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.886
r_dihedral_angle_3_deg12.433
r_dihedral_angle_4_deg8.13
r_dihedral_angle_1_deg7.161
r_scangle_it4.325
r_scbond_it3.616
r_mcangle_it2.232
r_mcbond_it1.822
r_angle_refined_deg1.49
r_angle_other_deg0.818
r_symmetry_vdw_refined0.234
r_nbd_refined0.216
r_xyhbond_nbd_refined0.198
r_nbtor_refined0.193
r_symmetry_vdw_other0.179
r_symmetry_hbond_refined0.179
r_nbd_other0.173
r_chiral_restr0.085
r_nbtor_other0.084
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_gen_planes_other0.004
r_bond_other_d0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms704
Nucleic Acid Atoms
Solvent Atoms65
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing