2C9O

3D Structure of the human RuvB-like helicase RuvBL1

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6	293	PROTEIN WAS CRYSTALLISED USING THE VAPOR DIFFUSION METHOD (SITTING DROP). THE WELLS CONTAINED 500 MICROLITERS OF PRECIPITANT SOLUTION AND THE DROPS WERE COMPOSED OF 1.5 MICROLITERS OF PROTEIN SOLUTION (15 MG/ML) AND 1.5 MICROLITERS OF RESERVOIR SOLUTION. THE BEST CRYSTALS WERE OBTAINED FROM A SOLUTION CONTAINING 1.6 M SODIUM MALONATE PH 6 AT 293 K.

Crystal Properties
Matthews coefficient	Solvent content
3.09	59.85

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 207.08	α = 90
b = 207.08	β = 90
c = 60.71	γ = 120

Symmetry
Space Group	P 6

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC CCD			M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID14-4		ESRF	ID14-4

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.2	45.4	96.5	0.07	8.1	8.3		73593

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.2	2.32	80		0.62	1.2	3.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2.2	179.61	70028	3705	97.1	0.209	0.206	0.257	RANDOM	46.22

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.55	0.28		0.55		-0.83

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.709
r_dihedral_angle_4_deg	19.872
r_dihedral_angle_3_deg	16.104
r_dihedral_angle_1_deg	5.958
r_scangle_it	3.011
r_scbond_it	1.995
r_angle_refined_deg	1.5
r_mcangle_it	1.165
r_mcbond_it	0.972
r_angle_other_deg	0.804
r_nbd_refined	0.197
r_symmetry_vdw_other	0.192
r_symmetry_hbond_refined	0.185
r_nbd_other	0.179
r_nbtor_refined	0.171
r_mcbond_other	0.164
r_xyhbond_nbd_refined	0.161
r_symmetry_vdw_refined	0.135
r_nbtor_other	0.087
r_chiral_restr	0.081
r_bond_refined_d	0.014
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8467
Nucleic Acid Atoms
Solvent Atoms	158
Heterogen Atoms	81

Software

Software
Software Name	Purpose
SHARP	model building
SCALA	data scaling
SHELXCD	phasing
SHELXD	phasing
SHELXE	phasing
SHARP	phasing
REFMAC	refinement