2C5I

N-terminal domain of tlg1 complexed with N-terminus of vps51 in distorted conformation


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.58 MG/ML PROTEIN, 66% SATURATED AMMONIUM SULPHATE, 100 MM NA CITRATE PH 5.5 WITH A 3-FOLD MOLAR EXCESS OF THE PEPTIDE, 20% GLYCEROL FOR FREEZING
Crystal Properties
Matthews coefficientSolvent content
2.7650

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.776α = 90
b = 65.776β = 90
c = 62.577γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2004-02-14MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.939,0.981ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.34199.60.1224217108
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.4299.114.122

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.356.8677032899.20.2290.2260.296RANDOM41.82
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.921.462.92-4.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.307
r_dihedral_angle_3_deg17.261
r_dihedral_angle_4_deg12.183
r_dihedral_angle_1_deg8.617
r_scangle_it3.829
r_scbond_it2.589
r_mcangle_it1.996
r_angle_refined_deg1.745
r_mcbond_it1.614
r_angle_other_deg1.005
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.307
r_dihedral_angle_3_deg17.261
r_dihedral_angle_4_deg12.183
r_dihedral_angle_1_deg8.617
r_scangle_it3.829
r_scbond_it2.589
r_mcangle_it1.996
r_angle_refined_deg1.745
r_mcbond_it1.614
r_angle_other_deg1.005
r_xyhbond_nbd_refined0.307
r_symmetry_vdw_refined0.264
r_symmetry_vdw_other0.25
r_symmetry_hbond_refined0.236
r_nbd_refined0.235
r_nbd_other0.194
r_nbtor_refined0.177
r_nbtor_other0.092
r_chiral_restr0.087
r_bond_refined_d0.02
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms979
Nucleic Acid Atoms
Solvent Atoms23
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing