2BRA

Structure of N-Terminal FAD Binding motif of mouse MICAL


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.6PROTEIN SAMPLE: 20 MM HEPES PH 7.0, 1M NACL, 1MM DTT, 4 MG/ML MICAL RECERVOIR: 100MM NA ACETATE PH 4.6, 42% W/V PEG 2K MME 0.3 M (NH4)2SO4
Crystal Properties
Matthews coefficientSolvent content
2.247

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.969α = 90
b = 87.338β = 111.68
c = 80.81γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRRORS2005-02-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X6ANSLSX6A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125098.90.1115.23.562811
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.07940.591.562.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT227.945966031241000.1950.1920.266RANDOM35.55
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.58-22.33-2.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.412
r_dihedral_angle_4_deg20.624
r_dihedral_angle_3_deg19.778
r_dihedral_angle_1_deg7.251
r_scangle_it4.351
r_scbond_it2.846
r_angle_refined_deg1.976
r_mcangle_it1.866
r_mcbond_it1.189
r_nbtor_refined0.321
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.412
r_dihedral_angle_4_deg20.624
r_dihedral_angle_3_deg19.778
r_dihedral_angle_1_deg7.251
r_scangle_it4.351
r_scbond_it2.846
r_angle_refined_deg1.976
r_mcangle_it1.866
r_mcbond_it1.189
r_nbtor_refined0.321
r_symmetry_vdw_refined0.295
r_nbd_refined0.246
r_symmetry_hbond_refined0.233
r_xyhbond_nbd_refined0.186
r_chiral_restr0.146
r_bond_refined_d0.02
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7413
Nucleic Acid Atoms
Solvent Atoms617
Heterogen Atoms107

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing