2BLY

HEWL after a high dose x-ray "burn"


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
130 % PEG 5000 MME, 1 M SODIUM CHLORIDE,5 0 MM PH 4.5 SODIUM ACETATE
Crystal Properties
Matthews coefficientSolvent content
1.9737.16

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.325α = 90
b = 77.325β = 90
c = 38.159γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDBENT MIRROR2004-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.45099.80.0525.167.823305-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4999.40.296.417.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.44522097119599.70.1310.1290.17RANDOM10.08
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.21-0.210.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.4
r_dihedral_angle_4_deg17.107
r_dihedral_angle_3_deg11.477
r_dihedral_angle_1_deg6.112
r_scangle_it5.179
r_scbond_it3.837
r_mcangle_it2.893
r_mcbond_it2.241
r_angle_refined_deg1.855
r_angle_other_deg1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.4
r_dihedral_angle_4_deg17.107
r_dihedral_angle_3_deg11.477
r_dihedral_angle_1_deg6.112
r_scangle_it5.179
r_scbond_it3.837
r_mcangle_it2.893
r_mcbond_it2.241
r_angle_refined_deg1.855
r_angle_other_deg1
r_symmetry_hbond_refined0.358
r_symmetry_vdw_other0.347
r_xyhbond_nbd_refined0.313
r_nbd_refined0.229
r_nbd_other0.198
r_symmetry_vdw_refined0.196
r_nbtor_refined0.188
r_chiral_restr0.146
r_nbtor_other0.092
r_bond_refined_d0.022
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.001
r_scbond_other
r_symmetry_metal_ion_refined
r_metal_ion_refined
r_mcbond_other
r_xyhbond_nbd_other
r_mcangle_other
r_metal_ion_other
r_symmetry_metal_ion_other
r_symmetry_hbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms115
Heterogen Atoms14

Software

Software
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
SHELXDphasing
SHELXEphasing
REFMACrefinement