2BHU

Crystal structure of Deinococcus radiodurans maltooligosyltrehalose trehalohydrolase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.520% PEG 2000 MME, 0.1 M TRIS-HCL PH8.5, 0.1 M MGCL2, pH 8.50
Crystal Properties
Matthews coefficientSolvent content
1.7529.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.58α = 90
b = 66.62β = 90
c = 152.51γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray1002003-07-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.146.9388.30.087.12.6216600
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.1682.90.392.31.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT1.144.412056101089188.20.1290.1280.159RANDOM9.11
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.39-0.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.79
r_dihedral_angle_4_deg17.39
r_dihedral_angle_3_deg11.588
r_dihedral_angle_1_deg5.974
r_scangle_it3.933
r_scbond_it3.116
r_mcangle_it2.353
r_mcbond_it1.941
r_angle_refined_deg1.797
r_symmetry_vdw_refined1.075
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.79
r_dihedral_angle_4_deg17.39
r_dihedral_angle_3_deg11.588
r_dihedral_angle_1_deg5.974
r_scangle_it3.933
r_scbond_it3.116
r_mcangle_it2.353
r_mcbond_it1.941
r_angle_refined_deg1.797
r_symmetry_vdw_refined1.075
r_angle_other_deg0.951
r_symmetry_vdw_other0.567
r_nbd_refined0.265
r_symmetry_hbond_refined0.212
r_nbd_other0.206
r_xyhbond_nbd_refined0.196
r_nbtor_refined0.186
r_chiral_restr0.126
r_nbtor_other0.087
r_bond_refined_d0.017
r_gen_planes_refined0.011
r_gen_planes_other0.003
r_bond_other_d0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4601
Nucleic Acid Atoms
Solvent Atoms1130
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
SOLVEphasing