2B0C

The crystal structure of the putative phosphatase from Escherichia coli


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.62980.05M MES, 25% PEG 5KMME, 0.2M (NH4)2SO4, 10mM MgCl2, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.6152

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.256α = 90
b = 62.256β = 90
c = 127.038γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315mirrors2005-03-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9798APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125099.20.04956.514.632264320062231
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0793.20.5782.356.63234

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT250166971659788599.40.2070.203370.200580.2588RANDOM41.22
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.630.63-1.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.769
r_dihedral_angle_3_deg14.209
r_dihedral_angle_4_deg9.287
r_dihedral_angle_1_deg5.288
r_scangle_it3.393
r_scbond_it2.22
r_mcangle_it1.297
r_angle_refined_deg1.273
r_mcbond_it0.766
r_nbtor_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.769
r_dihedral_angle_3_deg14.209
r_dihedral_angle_4_deg9.287
r_dihedral_angle_1_deg5.288
r_scangle_it3.393
r_scbond_it2.22
r_mcangle_it1.297
r_angle_refined_deg1.273
r_mcbond_it0.766
r_nbtor_refined0.304
r_nbd_refined0.212
r_symmetry_vdw_refined0.211
r_xyhbond_nbd_refined0.172
r_symmetry_hbond_refined0.135
r_chiral_restr0.083
r_bond_refined_d0.012
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1604
Nucleic Acid Atoms
Solvent Atoms161
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-2000data scaling
HKL-3000phasing