2AP0

Solution Structure of the C27A ScYLV P1-P2 Frameshifting Pseudoknot, 20 Lowest Energy Structures


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY2.7mM C27A ScYLV; 100mM KCl; 5mM MgCl290% H2O/10% D2O100mM KCl, 5mM MgCl26.0ambient283
22D NOESY2.7mM C27A ScYLV; 100mM KCl; 5mM MgCl2100% D2O100mM KCl, 5mM MgCl26.0ambient298
32D TOCSY2.7mM C27A ScYLV; 100mM KCl; 5mM MgCl2100% D2O100mM KCl, 5mM MgCl26.0ambient298
4TROSY2.7mM C27A ScYLV; 100mM KCl; 5mM MgCl2100% D2O
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
NMR Refinement
MethodDetailsSoftware
simulated annealing starting with random coordinates followed by refinement with residual dipolar couplingsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeMac OS X versionF. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax
2data analysisSparky3T. D. Goddard and D. G. Kneller
3refinementXPLOR-NIH2.10G. Marius Clore , John Kuszewski, Charles D. Schwieters, and Nico Tjandra