2A7O

Solution Structure of the hSet2/HYPB SRI domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESYU-15N (random labeling) HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
23D_13C-separated_NOESYU-95% 13C, U-98% 15N HYPB100% D2O100 mM KCl7.0ambient300
32D NOESYUnlabeled HYPB,100% D2O100% D2O100 mM KCl7.0ambient300
42D TOCSYUnlabeled HYPB,100% D2O100% D2O100 mM KCl7.0ambient300
5HNCAU-95% 13C, U-98% 15N labeled HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
6HN(CO)CAU-95% 13C, U-98% 15N labeled HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
7HN(CA)CBU-95% 13C, U-98% 15N labeled HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
8HN(COCA)CBU-95% 13C, U-98% 15N labeled HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
9HNCOU-95% 13C, U-98% 15N labeled HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
10HNCA-JU-95% 13C, U-98% 15N labeled HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
114D HC(CCO)NH-TOCSYU-95% 13C, U-98% 15N labeled HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
1215N-HSQCResidue selective labeling with 15N-lysine HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
13high-resolution 13C-HSQC10% 13C (fractional labeling) HYPB,100% D2O100% D2O100 mM KCl7.0ambient300
14RDC experiment in phageU-95% 13C, U-98% 15N labeled HYPB, 90% H2O, 10% D2O90% H2O/10% D2O100 mM KCl7.0ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA800
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealing, molecular dynamics, torsion angle dynamicsStructures were initially calculated using DYANA. CYANA 2.0 was used for automated data analysis to obtain additional NOE constraints. The structures were then refined against residual dipolar couplings using XPLOR-NIH and a water-refinement protocol.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with favorable non-bond energy
Conformers Calculated Total Number25
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe
2data analysisXEASY1.2
3structure solutionDYANA1.5
4structure solutionCYANA2.0
5refinementXPLOR-NIH2.9.7