2A18

carboxysome shell protein ccmK4, crystal form 2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62930.1M sodium citrate, pH 4.6, 30% PEG 4000, 0.2M ammonium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.243.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.549α = 90
b = 125.04β = 90
c = 32.521γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-06-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.10.95373ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.289099.90.11323.213.6138461384642.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.282.361000.3738.713.91346

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2A102.2862.5130711307168699.810.203640.203640.202620.22236RANDOM35.61
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.781.30.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.437
r_dihedral_angle_4_deg18.779
r_dihedral_angle_3_deg13.374
r_dihedral_angle_1_deg4.292
r_scangle_it2.019
r_scbond_it1.161
r_mcangle_it1.129
r_angle_refined_deg1.006
r_mcbond_it0.635
r_nbtor_refined0.291
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.437
r_dihedral_angle_4_deg18.779
r_dihedral_angle_3_deg13.374
r_dihedral_angle_1_deg4.292
r_scangle_it2.019
r_scbond_it1.161
r_mcangle_it1.129
r_angle_refined_deg1.006
r_mcbond_it0.635
r_nbtor_refined0.291
r_nbd_refined0.19
r_symmetry_vdw_refined0.158
r_symmetry_hbond_refined0.12
r_xyhbond_nbd_refined0.103
r_chiral_restr0.064
r_bond_refined_d0.008
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2325
Nucleic Acid Atoms
Solvent Atoms80
Heterogen Atoms3

Software

Software
Software NamePurpose
Blu-Icedata collection
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement