X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.1pH 7.10
Crystal Properties
Matthews coefficientSolvent content
2.2845.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 25.426α = 90
b = 40.49β = 90
c = 65.319γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IIC1995-03-15M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0132.60.114811473

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMIR2.014423386.20.172
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_angle_it11.229
n_sugar_angle_it11.008
n_phos_bond_it10.707
n_sugar_bond_it10.02
n_xhyhbond_nbd0.393
n_multtor_nbd0.272
n_singtor_nbd0.101
n_phos_bond_angle_d0.057
n_chiral_restr0.055
n_angle_d0.053
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_angle_it11.229
n_sugar_angle_it11.008
n_phos_bond_it10.707
n_sugar_bond_it10.02
n_xhyhbond_nbd0.393
n_multtor_nbd0.272
n_singtor_nbd0.101
n_phos_bond_angle_d0.057
n_chiral_restr0.055
n_angle_d0.053
n_plane_restr0.029
n_phos_bond_d0.028
n_bond_d0.024
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_sugar_bond_d
n_sugar_bond_angle_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms490
Solvent Atoms117
Heterogen Atoms1

Software

Software
Software NamePurpose
NUCLSQrefinement
RIGAKUdata reduction
RIGAKUdata scaling