1N0D

Stability of cyclic beta-hairpins: Asymmetric contibutions from side chains of hydrogen bonded cross-strand residue pair


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1DQF-COSY5 mM peptide, unbuffered90% H2O/10% D2O05.01 atm293
22D TOCSY5 mM peptide, unbuffered90% H2O/10% D2O05.01 atm293
32D ROESY5 mM peptide, unbuffered90% H2O/10% D2O05.01 atm293
42D ROESY5 mM peptide, unbuffered100% D2O05.01 atm293
52D COSY-355 mM peptide, unbuffered100% D2O05.01 atm293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
NMR Refinement
MethodDetailsSoftware
Distance geometry and restrained molecular dynamics with chemical shift refinement100 structures were calculated using distance geometry. The 80 structures of lowest penalty function were refined using the Sander module of AMBER (v6.0). The calculation employed 72 distance restraints, 11 dihedral angle restraints and 8 chemical shift restraints. The 20 structures of lowest violation energy were chosen to represent the structure. There are no violations of the input restraints > 0.1 A or 2 degrees. The rms. difference between calculation and observed chemical shifts is 0.07 ppm. 78% of the backbone geometries are in the most favourable region ofthe Ramachandran plot. The backbone heavy atom rmsd from the mean structure is 0.29+/-0.05 A.XwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number80
Conformers Submitted Total Number20
Representative Model5 (closest to the average)
Additional NMR Experimental Information
DetailsResonance assignments were made using standard 2D homonuclear techniques
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR3.1bruker
2data analysisFelix980accelrys
3structure solutionDGII980Tim Havel
4refinementAmber6.0Case, Kollman et al.
5structure solutionAmber6.0