1ZW3

Vinculin Head (0-258) in Complex with the Talin Rod residues 1630-1652


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.12931.2M NaH2PO4/0.8M K2HPO4, 100mM CAPS, pH 10.5, pH 6.1, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.753.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.621α = 90
b = 72.168β = 90
c = 96.725γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4TOROIDAL ZERODUR MIRROR2004-11-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-30.934ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.33099.90.07810.855837
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
3.33.421000.3783.03

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1XWJ3.3305837553326599.90.228080.224460.30723RANDOM46.771
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.035.02-3.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.597
r_dihedral_angle_3_deg25.179
r_dihedral_angle_4_deg18.836
r_dihedral_angle_1_deg10.437
r_scangle_it2.91
r_angle_refined_deg2.286
r_scbond_it1.908
r_mcangle_it1.451
r_mcbond_it1.136
r_angle_other_deg1.085
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.597
r_dihedral_angle_3_deg25.179
r_dihedral_angle_4_deg18.836
r_dihedral_angle_1_deg10.437
r_scangle_it2.91
r_angle_refined_deg2.286
r_scbond_it1.908
r_mcangle_it1.451
r_mcbond_it1.136
r_angle_other_deg1.085
r_nbd_refined0.298
r_symmetry_vdw_refined0.267
r_symmetry_hbond_refined0.258
r_nbtor_refined0.219
r_symmetry_vdw_other0.209
r_nbd_other0.208
r_chiral_restr0.204
r_xyhbond_nbd_refined0.19
r_mcbond_other0.151
r_nbtor_other0.106
r_bond_refined_d0.026
r_gen_planes_refined0.006
r_xyhbond_nbd_other0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2136
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing