1ZNU
Structure of cyclotide Kalata B1 in DPC micelles solution
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 3.6mM Kalata B1, 216mM perdeuterated DPC, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 2.8 | ambient | 313 | |
2 | 2D TOCSY | 3.6mM Kalata B1, 216mM perdeuterated DPC, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 2.8 | ambient | 313 | |
3 | DQF-COSY | 3.6mM Kalata B1, 216mM perdeuterated DPC, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 2.8 | ambient | 313 | |
4 | long-range HMQC | 3.6mM Kalata B1 | 100% D2O | 0 | 2.8 | ambient | 313 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Varian | UNITY | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing in torsion angle space | No energy minimization was done | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations, target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Additional NMR Experimental Information | |
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Details | This structure was determined from 1H homonuclear data in combination with 3JHBC' measured for Cys residues in D2O solution. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 1.01 | Guntert,P. |
2 | processing | XwinNMR | 2.6 | Bruker |
3 | processing | VNMR | 6.1c | Varian |
4 | data analysis | XEASY | x | Bartels,C. |
5 | refinement | CYANA | 1.01 | P.Guntert |