1ZH5

Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.6277PEG 8000, lithium sulfate, potassium chloride, sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.440

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 156.209α = 90
b = 55.03β = 90
c = 57.782γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315mirrors2005-02-16MSINGLE WAVELENGTH
21x-rayCCDADSC QUANTUM 315mirrors2005-01-26MMAD
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X251.1000NSLSX25
2SYNCHROTRONNSLS BEAMLINE X250.9798, 0.9795, 0.9611NSLSX25

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.852099.40.10314.95.34291922
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,21.851.9299.40.4963.75.34221

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.8519.92240918219299.370.202520.200220.24528RANDOM25.172
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.180.090.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.831
r_dihedral_angle_4_deg15.754
r_dihedral_angle_3_deg13.404
r_dihedral_angle_1_deg6.037
r_scangle_it3.266
r_scbond_it2.167
r_angle_refined_deg1.681
r_mcangle_it1.377
r_mcbond_it0.91
r_nbtor_refined0.298
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.831
r_dihedral_angle_4_deg15.754
r_dihedral_angle_3_deg13.404
r_dihedral_angle_1_deg6.037
r_scangle_it3.266
r_scbond_it2.167
r_angle_refined_deg1.681
r_mcangle_it1.377
r_mcbond_it0.91
r_nbtor_refined0.298
r_nbd_refined0.208
r_xyhbond_nbd_refined0.186
r_symmetry_hbond_refined0.183
r_symmetry_vdw_refined0.176
r_chiral_restr0.113
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3050
Nucleic Acid Atoms366
Solvent Atoms455
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
CBASSdata collection
HKL-2000data scaling
SHARPphasing