1YXR
NMR Structure of VPS4A MIT Domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | Uniform labeling with 15N and 13C. | 50 mM NaCl, 20 mM sodium phosphate, 10% D2O | 50 mM NaCl | 5.5 | ambient | 298 | |
2 | 3D_15N-separated_NOESY | Uniform labeling with 15N and 13C. | 50 mM NaCl, 20 mM sodium phosphate, 10% D2O | 50 mM NaCl | 5.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
automated NOE assignment using CYANA and torsion angle dynamics for structure calculations | The structures are based on 1432 NOE derived distance constraints, 150 dihedral angle constraints (generated by TALOS) and 114 distance constraints from hydrogen bonds | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 18 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 3D heteronuclear techniques |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | Felix | 97 | Accelyrs, San Diego |
2 | data analysis | Sparky | 3.110 | TD Goddard and DG Kneller |
3 | structure solution | CYANA | 2.0 | P Guntert |
4 | refinement | CNS | 1.1 | AT Brunger, et al. |