1XUA

Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.629228% (w/v) PEG 4000, 0.1M Na-Citrate, 0.2M (NH4) Acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.140.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.95α = 90
b = 100.43β = 90
c = 57.49γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-05-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.934ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92099.60.10412.85.54312243013-323
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9298.70.4633.85.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONrigid body refinement of 1U1WTHROUGHOUT1U1W1.919.840843216999.750.144460.142210.18657RANDOM17.342
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.572
r_scangle_it5.075
r_angle_other_deg3.832
r_scbond_it3.191
r_mcangle_it1.884
r_angle_refined_deg1.747
r_mcbond_it1.091
r_symmetry_vdw_other0.337
r_nbd_other0.304
r_symmetry_hbond_refined0.242
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.572
r_scangle_it5.075
r_angle_other_deg3.832
r_scbond_it3.191
r_mcangle_it1.884
r_angle_refined_deg1.747
r_mcbond_it1.091
r_symmetry_vdw_other0.337
r_nbd_other0.304
r_symmetry_hbond_refined0.242
r_nbd_refined0.241
r_symmetry_vdw_refined0.178
r_xyhbond_nbd_refined0.162
r_chiral_restr0.122
r_nbtor_other0.109
r_bond_refined_d0.023
r_gen_planes_other0.013
r_gen_planes_refined0.01
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4248
Nucleic Acid Atoms
Solvent Atoms432
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling