1XMP

Crystal Structure of PurE (BA0288) from Bacillus anthracis at 1.8 Resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5291PEG 4000, sodium formate, TRIS, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.448.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 168.263α = 90
b = 76.484β = 96.68
c = 102.675γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4Rh coated Si mirror2004-04-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.60.87000SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85099.50.08117.53.7120128120128
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.8695.40.5982.53.311473

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1QCZ1.831.141136811136815996500.16930.16930.167380.20549RANDOM16.47
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.352
r_dihedral_angle_4_deg15.507
r_dihedral_angle_3_deg12.783
r_dihedral_angle_1_deg5.924
r_scangle_it3.03
r_scbond_it2.196
r_angle_refined_deg1.289
r_mcangle_it1.089
r_mcbond_it0.93
r_angle_other_deg0.822
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.352
r_dihedral_angle_4_deg15.507
r_dihedral_angle_3_deg12.783
r_dihedral_angle_1_deg5.924
r_scangle_it3.03
r_scbond_it2.196
r_angle_refined_deg1.289
r_mcangle_it1.089
r_mcbond_it0.93
r_angle_other_deg0.822
r_symmetry_vdw_other0.24
r_nbd_refined0.205
r_symmetry_hbond_refined0.186
r_symmetry_vdw_refined0.184
r_nbd_other0.182
r_mcbond_other0.176
r_nbtor_refined0.164
r_xyhbond_nbd_refined0.15
r_nbtor_other0.083
r_chiral_restr0.077
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9448
Nucleic Acid Atoms
Solvent Atoms1219
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing