1XHO

Chorismate mutase from Clostridium thermocellum Cth-682


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.62912.5M ammonium sulfate, 0.1M HEPES, pH 7.6, vapor diffusion, temperature 291K, pH 7.60

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.201α = 90
b = 48.201β = 90
c = 123.693γ = 120
Symmetry
Space GroupP 31

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.21093.30.05715073
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.22.2842.90.167

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.29.96150497651000.1980.1940.255THIN SHELLS29.82
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.221-0.111-0.2210.332
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.576
r_dihedral_angle_3_deg12.896
r_dihedral_angle_4_deg10.139
r_dihedral_angle_1_deg6.321
r_scangle_it2.849
r_mcangle_it2.744
r_mcbond_it2.09
r_scbond_it2.007
r_angle_refined_deg1.103
r_angle_other_deg0.733
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.576
r_dihedral_angle_3_deg12.896
r_dihedral_angle_4_deg10.139
r_dihedral_angle_1_deg6.321
r_scangle_it2.849
r_mcangle_it2.744
r_mcbond_it2.09
r_scbond_it2.007
r_angle_refined_deg1.103
r_angle_other_deg0.733
r_mcbond_other0.415
r_nbd_refined0.193
r_symmetry_vdw_other0.17
r_nbd_other0.169
r_nbtor_refined0.157
r_xyhbond_nbd_refined0.134
r_symmetry_hbond_refined0.118
r_symmetry_vdw_refined0.094
r_nbtor_other0.08
r_chiral_restr0.062
r_bond_refined_d0.012
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2569
Nucleic Acid Atoms
Solvent Atoms63
Heterogen Atoms2

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction