1XG7

Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
129125w/v% PEG 3350, 0.15M potassium nitrate, modified microbatch, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.1342.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.688α = 90
b = 81.639β = 90
c = 90.581γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-IDAPS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.885098.10.05840388
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.881.9593.70.159

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8837.2240282202597.60.210.2070.261THIN SHELLS22.03
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0980.0480.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.58
r_dihedral_angle_4_deg15.705
r_dihedral_angle_3_deg13.527
r_dihedral_angle_1_deg5.477
r_scangle_it3.735
r_angle_other_deg3.656
r_mcangle_it3.329
r_scbond_it2.471
r_mcbond_it2.268
r_angle_refined_deg1.292
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.58
r_dihedral_angle_4_deg15.705
r_dihedral_angle_3_deg13.527
r_dihedral_angle_1_deg5.477
r_scangle_it3.735
r_angle_other_deg3.656
r_mcangle_it3.329
r_scbond_it2.471
r_mcbond_it2.268
r_angle_refined_deg1.292
r_symmetry_vdw_other0.362
r_symmetry_vdw_refined0.227
r_nbd_other0.214
r_nbd_refined0.211
r_nbtor_refined0.185
r_xyhbond_nbd_refined0.142
r_nbtor_other0.106
r_chiral_restr0.082
r_symmetry_hbond_refined0.045
r_bond_refined_d0.015
r_gen_planes_other0.01
r_gen_planes_refined0.007
r_bond_other_d
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3876
Nucleic Acid Atoms
Solvent Atoms133
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
PHASERphasing