1XFE
Solution structure of the LA7-EGFA pair from the LDL receptor
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated NOESY, TOCSY | 1.5 mM LA7-EGFA U-15N 10 mM CaCl2; 90% H2O, 10% D2O | 90% H2O/10% D2O | 1:6 molar protein/CaCl2 | 6.5 | ambient | 298 | |
2 | HNHA, HNHB | 1.5 mM LA7-EGFA U-15N 10 mM CaCl2; 90% H2O, 10% D2O | 90% H2O/10% D2O | 1:6 molar protein/CaCl2 | 6.5 | ambient | 298 | |
3 | 2D_NOESY, 2D_TOCSY | 1 mM LA7-EGFA 6 mM CaCl2; 90% H2O, 10% D2O | 90% H2O/10% D2O | 1:6 molar protein/CaCl2 | 6.5 | ambient | 298 | |
4 | 13C_HSQC | 0.6 mMM LA7-EGFA U-15N, 10% 13C 4 mM CaCl2; 99% D2O | 99% D2O | 1:6 molar protein/CaCl2 | 6.5 | ambient | 298 | |
5 | HNCA, HNCOCA, HNCO, HNCACB | 0.3 mM LA7-EGFA U-15N,13C 2 mM CaCl2; 90% H2O, 10% D2O | 90% H2O/10% D2O | 1:6 molar protein/CaCl2 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 600 |
2 | Bruker | AMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry simulated annealing | structures are based on 1564 NOE-derived constraints, 119 dihedral angle restraints, 14 distance restraints for hydrogen bonds, and 55 RDC constraints. | CNS_solve |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 43 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CNS_solve | 1.1 | Brunger |
2 | processing | Gifa | 4.3 | Pons et al |
3 | data analysis | XEASY | 1.2 | Bartels et al |
4 | refinement | CNS_solve | 1.1 | Brunger |