X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.529320-23% PEG 3350, 0.25M MgCl2, 0.1M Sodium Acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
237.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.412α = 90
b = 87.338β = 90
c = 31.366γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-06-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I7110.996MAX III711

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.559.7695.50.04324.5373653035091-321
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.51.5590.50.17310.173663

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4AZU1.50159.76234706182399.630.171850.171850.16970.21423RANDOM15.366
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.13-0.610.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.723
r_dihedral_angle_3_deg12.652
r_sphericity_free8.396
r_dihedral_angle_4_deg7.313
r_dihedral_angle_1_deg6.611
r_scangle_it3.995
r_sphericity_bonded3.824
r_scbond_it2.971
r_mcangle_it2.108
r_mcbond_it1.704
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.723
r_dihedral_angle_3_deg12.652
r_sphericity_free8.396
r_dihedral_angle_4_deg7.313
r_dihedral_angle_1_deg6.611
r_scangle_it3.995
r_sphericity_bonded3.824
r_scbond_it2.971
r_mcangle_it2.108
r_mcbond_it1.704
r_rigid_bond_restr1.626
r_angle_refined_deg1.483
r_angle_other_deg0.805
r_mcbond_other0.663
r_symmetry_vdw_refined0.316
r_symmetry_vdw_other0.274
r_nbd_refined0.203
r_nbd_other0.178
r_nbtor_refined0.174
r_symmetry_hbond_refined0.167
r_xyhbond_nbd_refined0.162
r_chiral_restr0.092
r_nbtor_other0.086
r_bond_refined_d0.015
r_metal_ion_refined0.011
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1943
Nucleic Acid Atoms
Solvent Atoms218
Heterogen Atoms2

Software

Software
Software NamePurpose
MAR345data collection
XDSdata reduction
AMoREphasing
REFMACrefinement
XDSdata scaling