1X6Z

Structure 1: cryocooled crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 0.78A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.229360% Ammonium Sulfate, 0.1M Hepes, pH 8.2, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
238.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.244α = 90
b = 37.244β = 90
c = 147.856γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-21999-09-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.65APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.7836.0489.80.0820.0825.4711.861074511074516.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
0.780.7941.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1DZO0.7836.0410745110745154281000.142520.142520.141940.1535RANDOM10.641
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.230.23-0.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.027
r_dihedral_angle_4_deg15.201
r_sphericity_free14.884
r_dihedral_angle_3_deg9.973
r_dihedral_angle_1_deg6.285
r_scangle_it4.234
r_sphericity_bonded3.227
r_scbond_it3.223
r_mcangle_it2.329
r_angle_refined_deg1.986
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.027
r_dihedral_angle_4_deg15.201
r_sphericity_free14.884
r_dihedral_angle_3_deg9.973
r_dihedral_angle_1_deg6.285
r_scangle_it4.234
r_sphericity_bonded3.227
r_scbond_it3.223
r_mcangle_it2.329
r_angle_refined_deg1.986
r_mcbond_it1.762
r_rigid_bond_restr1.18
r_angle_other_deg1.021
r_mcbond_other0.518
r_symmetry_vdw_refined0.323
r_nbd_refined0.251
r_symmetry_vdw_other0.236
r_nbd_other0.192
r_symmetry_hbond_refined0.183
r_chiral_restr0.153
r_xyhbond_nbd_refined0.151
r_nbtor_other0.09
r_bond_refined_d0.019
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms863
Nucleic Acid Atoms
Solvent Atoms232
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
d*TREKdata reduction
CCP4data scaling