1VAP

THE MONOMERIC ASP49 SECRETORY PHOSPHOLIPASE A2 FROM THE VENOM OF AGKISTRIDON PISCIVORUS PISCIVORUS


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.9938.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.71α = 94.17
b = 39.89β = 79.1
c = 42.85γ = 106.27
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayAREA DETECTORXUONG-HAMLIN MULTIWIRE1990-12-04M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION1.6101.5214100.19722.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor30.9
p_staggered_tor20.6
p_planar_tor4.6
p_multtor_nbd0.265
p_chiral_restr0.213
p_singtor_nbd0.165
p_planar_d0.027
p_plane_restr0.025
p_bond_d0.01
p_angle_d
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor30.9
p_staggered_tor20.6
p_planar_tor4.6
p_multtor_nbd0.265
p_chiral_restr0.213
p_singtor_nbd0.165
p_planar_d0.027
p_plane_restr0.025
p_bond_d0.01
p_angle_d
p_angle_deg
p_hb_or_metal_coord
p_mcbond_it
p_mcangle_it
p_scbond_it
p_scangle_it
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1942
Nucleic Acid Atoms
Solvent Atoms139
Heterogen Atoms

Software

Software
Software NamePurpose
HAMLINdata collection
X-PLORmodel building
PROFFTrefinement
X-PLORrefinement
HAMLINdata reduction
X-PLORphasing