1V4A

Structure of the N-terminal Domain of Escherichia coli Glutamine Synthetase adenylyltransferase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.5294PEG 2000 MME, sodium formate, sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.6953.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 116.836α = 90
b = 116.836β = 90
c = 67.744γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCD2003-02-05MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.95372, 0.97844, 0.97855APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
121001000.0838.935364243642411
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.071000.5175.23591

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2503628134466181599.910.230.229930.227850.269RANDOM30.498
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.530.260.53-0.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.348
r_scangle_it3.726
r_mcangle_it2.887
r_scbond_it2.573
r_mcbond_it1.941
r_angle_refined_deg1.076
r_angle_other_deg0.78
r_symmetry_vdw_other0.224
r_nbd_other0.218
r_nbd_refined0.198
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.348
r_scangle_it3.726
r_mcangle_it2.887
r_scbond_it2.573
r_mcbond_it1.941
r_angle_refined_deg1.076
r_angle_other_deg0.78
r_symmetry_vdw_other0.224
r_nbd_other0.218
r_nbd_refined0.198
r_symmetry_hbond_refined0.173
r_xyhbond_nbd_refined0.155
r_nbtor_other0.083
r_chiral_restr0.059
r_symmetry_vdw_refined0.054
r_bond_refined_d0.011
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3370
Nucleic Acid Atoms
Solvent Atoms171
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing