1UZ9

Crystallographic and solution studies of N-lithocholyl insulin: a new generation of prolonged-acting insulins.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
180.5 M TRIS-HCL PH 8.0 0.1M TRI-SODIUM CITRATE, 2MM ZINC ACETATE, 0.05% W/V M-CRESOL
Crystal Properties
Matthews coefficientSolvent content
2.346

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.79α = 90
b = 51.79β = 90
c = 68.34γ = 120
Symmetry
Space GroupP 63 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATEMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5824980.034335.9768919.13
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.581.61980.139145

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1XDA1.6247336353980.180.1790.206RANDOM19.22
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.520.260.52-0.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.716
r_scangle_it3.872
r_angle_other_deg2.656
r_scbond_it2.604
r_mcangle_it2.231
r_angle_refined_deg1.821
r_mcbond_it1.277
r_symmetry_hbond_refined0.463
r_nbtor_other0.46
r_symmetry_vdw_refined0.279
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.716
r_scangle_it3.872
r_angle_other_deg2.656
r_scbond_it2.604
r_mcangle_it2.231
r_angle_refined_deg1.821
r_mcbond_it1.277
r_symmetry_hbond_refined0.463
r_nbtor_other0.46
r_symmetry_vdw_refined0.279
r_gen_planes_other0.25
r_nbd_refined0.243
r_symmetry_vdw_other0.225
r_nbd_other0.111
r_dihedral_angle_3_deg0.107
r_gen_planes_refined0.015
r_bond_refined_d0.013
r_chiral_restr0.011
r_xyhbond_nbd_refined0.007
r_bond_other_d0.004
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms388
Nucleic Acid Atoms
Solvent Atoms50
Heterogen Atoms46

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing