1UTX

Regulation of Cytolysin Expression by Enterococcus faecalis: Role of CylR2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17SALTING-IN BY DIALYSIS AGAINST 0.2 M NAI, 10 % GLYCEROL, 50 MM HEPES PH 7.0
Crystal Properties
Matthews coefficientSolvent content
2.754.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.679α = 90
b = 63.679β = 90
c = 41.187γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plateCOSMIC MIRRORS CMF12-38CU62003-01-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODESIEMENS M18X

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92099.20.1041914.81308625
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9299.90.445.813.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.919.76132086511000.1550.1530.193RANDOM25
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.19-0.190.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg4.857
r_scangle_it3.284
r_scbond_it2.028
r_mcangle_it1.327
r_angle_refined_deg1.219
r_angle_other_deg0.812
r_mcbond_it0.725
r_symmetry_vdw_other0.384
r_symmetry_hbond_refined0.333
r_nbd_other0.246
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg4.857
r_scangle_it3.284
r_scbond_it2.028
r_mcangle_it1.327
r_angle_refined_deg1.219
r_angle_other_deg0.812
r_mcbond_it0.725
r_symmetry_vdw_other0.384
r_symmetry_hbond_refined0.333
r_nbd_other0.246
r_nbd_refined0.231
r_xyhbond_nbd_refined0.222
r_symmetry_vdw_refined0.124
r_nbtor_other0.121
r_metal_ion_refined0.087
r_chiral_restr0.079
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1071
Nucleic Acid Atoms
Solvent Atoms193
Heterogen Atoms10

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXDphasing
SHELXEphasing
REFMACrefinement