1UC6

Solution Structure of the Carboxyl Terminal Domain of the Ciliary Neurotrophic Factor Receptor


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY2mM CNTFR-BC U-15N; 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA90% H2O, 10% D2O, pH 6.5100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA6.5ambient298
23D_13C-separated_NOESY1.3mM CNTFR-BC U-15N,13C; 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA90% H2O, 10% D2O, pH 6.5100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA6.5ambient298
3HNHA1.3mM CNTFR-BC U-15N,13C; 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA90% H2O, 10% D2O, pH 6.5100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA6.5ambient298
4nJ-HMQC2mM CNTFR-BC U-15N; 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA90% H2O, 10% D2O, pH 6.5100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA750
2VarianINOVA500
NMR Refinement
MethodDetailsSoftware
simulated annealingFollowing identification of the global fold from manual inspection of the nuclear Overhauser effect spectroscopy data, ambiguous NOE restraints were resolved using the iterative ARIA method (Nilges et al., 1997) and the structure was determined by simulated annealing using the CNS package.VNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number21
Representative Model1 (minimized average structure)
Additional NMR Experimental Information
DetailsFor determination of hydrogen bonds, amide protons exchanging slowly with deuterons were identified by time course 1H-15N HSQC experiments on a freeze-dried 15N-labelled sample of BC dissolved in D2O buffer.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1CVarian
2processingNMRPipe2.0F. Delaglio
3data analysisPIPP1.0Garrett D
4data analysisSparky1.06Goddard, T. D
5structure solutionARIA1.1Nilges, M.
6structure solutionCNS1.1Brunger, A.T.
7refinementCNS1.1