1TUZ
NMR Structure of the Diacylglycerol kinase alpha, NESGC target HR532
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 1 mM, U-15N,13C HR532, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 | |
2 | 3D_15N-separated_NOESY | 1 mM, U-15N,13C HR532, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 | |
3 | HNHA | 1 mM, U-15N,13C HR532, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 | |
4 | RD HABCABcoNHN | 1 mM, U-15N,13C HR532, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 | |
5 | RD HCCH COSY | 1 mM, U-15N,13C HR532, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 600 |
3 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry simulated annealing torsion angle dynamics | the structures are based on a total of 2205 restraints, 2039 are NOE-derived distance constraints, 166 dihedral angle restraints. | DYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Additional NMR Experimental Information | |
---|---|
Details | The structure was determined using triple-resonance and RD NMR spectroscopy. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | DYANA | 1.5 | Guentert |
2 | processing | NMRPipe | 2.3 | Delagio |
3 | collection | XwinNMR | n.a | n.a |
4 | collection | VNMR | n.a | n.a |
5 | data analysis | XEASY | 1.3.13 | Bartels |