X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.2298PEG 3000, sodium citrate, trehalose, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.160

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 101.929α = 90
b = 101.929β = 90
c = 228.212γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 4mirrors2003-08-06MSINGLE WAVELENGTH
21x-ray95CCDADSC QUANTUM 4mirrors2003-09-14MMAD
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.21.1000ALS8.2.2
2SYNCHROTRONALS BEAMLINE 8.3.10.9797, 1.0000ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.6500.0660.06617.454390442803
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.592.6995.60.4090.4093.24.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.615417633965721061000.220360.217550.27377RANDOM39.957
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.151.072.15-3.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.882
r_dihedral_angle_3_deg24.791
r_dihedral_angle_4_deg24.326
r_dihedral_angle_1_deg7.638
r_scangle_it4.091
r_scbond_it3.075
r_mcangle_it1.911
r_angle_refined_deg1.818
r_mcbond_it1.38
r_nbtor_refined0.339
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.882
r_dihedral_angle_3_deg24.791
r_dihedral_angle_4_deg24.326
r_dihedral_angle_1_deg7.638
r_scangle_it4.091
r_scbond_it3.075
r_mcangle_it1.911
r_angle_refined_deg1.818
r_mcbond_it1.38
r_nbtor_refined0.339
r_nbd_refined0.292
r_xyhbond_nbd_refined0.207
r_symmetry_hbond_refined0.207
r_symmetry_vdw_refined0.187
r_chiral_restr0.168
r_bond_refined_d0.018
r_gen_planes_refined0.012
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7417
Nucleic Acid Atoms
Solvent Atoms410
Heterogen Atoms92

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing