1T98

Crystal Structure of MukF(1-287)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.5291PEG 2K MME, calcium chloride, ammonium phosphate, bis-tris propane, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K, pH 8.50
Crystal Properties
Matthews coefficientSolvent content
2.3146.84

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.699α = 90
b = 58.699β = 90
c = 307.414γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102002-01-03MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.1272, 0.9797ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.9102.47195.90.07712.255.312713
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.93.0695.90.2924.54.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.9201196062595.50.2350.2330.273RANDOM34.32
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.450.731.45-2.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.942
r_scangle_it3.066
r_scbond_it1.876
r_mcangle_it1.269
r_angle_refined_deg1.141
r_mcbond_it0.651
r_symmetry_vdw_refined0.256
r_nbd_refined0.244
r_symmetry_hbond_refined0.19
r_xyhbond_nbd_refined0.155
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.942
r_scangle_it3.066
r_scbond_it1.876
r_mcangle_it1.269
r_angle_refined_deg1.141
r_mcbond_it0.651
r_symmetry_vdw_refined0.256
r_nbd_refined0.244
r_symmetry_hbond_refined0.19
r_xyhbond_nbd_refined0.155
r_chiral_restr0.091
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4228
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing