1SVJ
The solution structure of the nucleotide binding domain of KdpB
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-SEPARATED_NOESY | 1.4MM KDPBN U-15N,13C, 50MM PHOSPHATE BUFFER, 100MM NACL, 0.05% SODIUM AZIDE; 1.2MM KDPBN U-15N, 50MM PHOSPHATE BUFFER, 100MM NACL, 0.05% SODIUM AZIDE | 100mM NACL | 6.0 | AMBIENT | 300 | ||
2 | CNH- NOESY | 1.4MM KDPBN U-15N,13C, 50MM PHOSPHATE BUFFER, 100MM NACL, 0.05% SODIUM AZIDE; 1.2MM KDPBN U-15N, 50MM PHOSPHATE BUFFER, 100MM NACL, 0.05% SODIUM AZIDE | 100mM NACL | 6.0 | AMBIENT | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 900 |
2 | Bruker | DMX | 750 |
3 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | BASED ON A TOTAL OF 2232 NOE-BASED DISTANCE RESTRAINTS, 256 DIHEDRAL ANGLE RESTRAINTS, 67 J- RESTRAINTS AND 66 HYDROGEN BOND RESTRAINTS | X-PLOR NIH-2.9.3 |
NMR Ensemble Information | |
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Conformer Selection Criteria | |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH-2.9.3 | NIH-2.9.3 | BRUNGER |
2 | structure solution | XwinNMR | 3.5 | |
3 | structure solution | X-PLOR NIH-2.9.3 | NIH-2.9.3 |