1SE7

Solution structure of the E. coli bacteriophage P1 encoded HOT protein: a homologue of the theta subunit of E. coli DNA polymerase III


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY1.3mM U-[13C,15N] protein, 5mM Tris, 100mM NaCl, 5mM NaN390% H2O/10% D2O100mM NaCl7ambient298
23D_15N-separated_NOESY1.3mM U-[13C,15N] protein, 5mM Tris, 100mM NaCl, 5mM NaN390% H2O/10% D2O100mM NaCl7ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealing, molecular dynamics, torsion angle dynamicsThe structures were computed using default ARIA parameters, with qrelax set to false. 430 manually assigned NOE distance restraints were included, and qshift and qexclude were set to false for the manually assigned NOEs. ARIA assigned 1140 unambiguous and 435 ambiguous NOE distance restraints. 51 dihedral restraints, 46 hydrogen bond restraints, and 36 backbone amide residual dipolar couplings were also used in the calculation.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number20
Conformers Submitted Total Number7
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was determined using triple-resonance NMR spectroscopy.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2.1 Rev 2002.044.17.08
2data analysisNMRView5.0.4
3structure solutionARIA1.2
4structure solutionCNS1.1
5refinementCNS1.1