1SBU
NMR structure of a peptide containing a dimetylthiazolidine : an analog of delta conotoxin EVIA loop 2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | peptide concentration : 2mM | 90% H2O/10% D2O | 3 | 1 atm | 283 | ||
2 | 2D TOCSY | peptide concentration : 2mM | 90% H2O/10% D2O | 3 | 1 atm | 283 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Varian | UNITYPLUS | 500 |
NMR Refinement | ||
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Method | Details | Software |
The peptide was subjected to simulated annealing restraints molecular dynamics using the cvff forcefield | IRMA was used to refine the structure | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations, structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | |
2 | collection | VNMR | 2000 (6.1) | |
3 | processing | Felix | 2000 | |
4 | structure solution | Discover | 2.98 | |
5 | refinement | IRMA | 200 | Boelens R, Koning TMG, Kaptein R |