1R5B

Crystal structure analysis of sup35


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5277HEPES, Ethylene Glycol, PEG 8000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties
Matthews coefficientSolvent content
3.0959.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.796α = 90
b = 83.796β = 90
c = 165.937γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-04-12MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.9787, 0.9724, 0.9791ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.352099.50.04711.26.928714247901
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.352.4199.50.37526.92840

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.352023902128499.350.2560.2550.284RANDOM33.37
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.520.52-1.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.717
r_scangle_it1.924
r_angle_refined_deg1.29
r_scbond_it1.148
r_angle_other_deg0.826
r_mcangle_it0.781
r_mcbond_it0.41
r_symmetry_vdw_other0.238
r_nbd_other0.22
r_nbd_refined0.202
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.717
r_scangle_it1.924
r_angle_refined_deg1.29
r_scbond_it1.148
r_angle_other_deg0.826
r_mcangle_it0.781
r_mcbond_it0.41
r_symmetry_vdw_other0.238
r_nbd_other0.22
r_nbd_refined0.202
r_symmetry_vdw_refined0.19
r_symmetry_hbond_refined0.184
r_xyhbond_nbd_refined0.162
r_nbtor_other0.085
r_chiral_restr0.074
r_bond_refined_d0.013
r_gen_planes_refined0.004
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3222
Nucleic Acid Atoms
Solvent Atoms159
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
SHARPphasing