1Q3L

Chromodomain Of HP1 Complexed With Histone H3 Tail Containing monomethyllysine 9.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.1283Ammonium Sulfate, MES, pH 6.1, VAPOR DIFFUSION, SITTING DROP, temperature 283K
Crystal Properties
Matthews coefficientSolvent content
2.3848.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.809α = 90
b = 76.828β = 90
c = 75.625γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152002-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X250.92080NSLSX25

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6438.350.90570.05152.97.371075210752
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.641.70.9880.14320.51211

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1KNA1.6438.35107521075253790.570.223150.223150.222180.24091RANDOM22.511
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.46-1.05-0.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.727
r_scangle_it4.871
r_scbond_it3.019
r_mcangle_it2.124
r_angle_refined_deg1.898
r_angle_other_deg1.241
r_mcbond_it1.206
r_chiral_restr0.431
r_symmetry_hbond_refined0.268
r_symmetry_vdw_other0.264
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.727
r_scangle_it4.871
r_scbond_it3.019
r_mcangle_it2.124
r_angle_refined_deg1.898
r_angle_other_deg1.241
r_mcbond_it1.206
r_chiral_restr0.431
r_symmetry_hbond_refined0.268
r_symmetry_vdw_other0.264
r_nbd_other0.26
r_nbd_refined0.226
r_symmetry_vdw_refined0.219
r_xyhbond_nbd_refined0.175
r_nbtor_other0.113
r_bond_refined_d0.017
r_gen_planes_refined0.011
r_gen_planes_other0.005
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms498
Nucleic Acid Atoms
Solvent Atoms95
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing