X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.3291PEG 3350, PEG 400, Tris, NaI, glycerol, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.4349.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.094α = 90
b = 148.776β = 90
c = 176.71γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-09-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.933ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.954595.30.07812.2941929419211
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.95295.50.352.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.95201833018330144651000.190750.188110.23976RANDOM20.983
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.020.010.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg16.507
r_scangle_it13.156
r_scbond_it10.082
r_mcangle_it6.609
r_mcbond_it4.712
r_dihedral_angle_1_deg3.437
r_angle_other_deg1.275
r_angle_refined_deg1.25
r_nbtor_other1.075
r_symmetry_vdw_refined0.374
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg16.507
r_scangle_it13.156
r_scbond_it10.082
r_mcangle_it6.609
r_mcbond_it4.712
r_dihedral_angle_1_deg3.437
r_angle_other_deg1.275
r_angle_refined_deg1.25
r_nbtor_other1.075
r_symmetry_vdw_refined0.374
r_nbd_refined0.337
r_xyhbond_nbd_other0.33
r_symmetry_hbond_refined0.323
r_nbd_other0.3
r_symmetry_vdw_other0.297
r_xyhbond_nbd_refined0.284
r_chiral_restr0.109
r_metal_ion_refined0.033
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_gen_planes_other0.001
r_bond_other_d
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7932
Nucleic Acid Atoms
Solvent Atoms853
Heterogen Atoms134

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing