1OW5
NMR structure of the Saccharomyces cerevisiae SAM (Sterile Alpha Motif) domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 13C/15N simultaneous 3D NOESY | 0.8 mM Ste11 SAM domain, U-15N,13C | 20 mM sodium phosphate buffer, 500 mM sodium chloride, 0.03% sodium azide, 90% H2O, 10% D2O | 500 mM sodium chloride | 6.8 | ambient | 293 | |
2 | 2D NOESY | 0.8 mM Ste11 SAM domain, U-15N,13C | 20 mM sodium phosphate buffer, 500 mM sodium chloride, 0.03% sodium azide, 90% H2O, 10% D2O | 500 mM sodium chloride | 6.8 | ambient | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing from an extended starting structure | 971 NOE restraints from a simultaneous 13C/15N NOESY in 10% D2O, 69 NOE restraints from a 2D NOESY in 99% D2O, 48 hydrogen bonds restraints and 59 pairs of phi/psi dihedral restraints from chemical shifts using the TALOS method | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with acceptable covalent geometry |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (no violations > 0.5 a, lowest energy, good geometry) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 3D heteronuclear techniques. Assignments were derived from HNCACB, CBCACONH, CBHD, CBHE, HCCH-TOCSY, HCC-TOCSY and CCC-TOCSY experiments |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.1 | Delaglio |
2 | structure solution | X-PLOR | NIH | Brunger, Clore |
3 | data analysis | NMRView | 5.0 | Johnson |
4 | refinement | X-PLOR | NIH | Brunger, Clore |