1OU6

Biosynthetic thiolase from Zoogloea ramigera in complex with acetyl-O-pantetheine-11-pivalate


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5288ammonium sulfate, lithium sulfate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties
Matthews coefficientSolvent content
2.7354.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 84.38α = 90
b = 78.95β = 92.96
c = 148.82γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR5911.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.072093.90.19.52.8111939111939-323
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.072.283.60.2324.52.236071

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.0720111938111938487694.320.163070.163070.160810.21171RANDOM9.895
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.870.01-0.522.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.297
r_scangle_it4.134
r_scbond_it2.854
r_mcangle_it2.656
r_mcbond_it1.935
r_angle_refined_deg1.432
r_angle_other_deg0.836
r_symmetry_vdw_other0.275
r_nbd_other0.244
r_symmetry_hbond_refined0.213
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.297
r_scangle_it4.134
r_scbond_it2.854
r_mcangle_it2.656
r_mcbond_it1.935
r_angle_refined_deg1.432
r_angle_other_deg0.836
r_symmetry_vdw_other0.275
r_nbd_other0.244
r_symmetry_hbond_refined0.213
r_nbd_refined0.208
r_xyhbond_nbd_refined0.206
r_symmetry_vdw_refined0.129
r_chiral_restr0.088
r_nbtor_other0.087
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_gen_planes_other0.004
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11336
Nucleic Acid Atoms
Solvent Atoms1557
Heterogen Atoms74

Software

Software
Software NamePurpose
XDSdata scaling
XDSdata reduction
REFMACrefinement