1O58

Crystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.80 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION,SITTING DROP,NANODROP9.229350% PEG-400, 0.1M CHES pH 9.5, 0.2M NaCl, pH 9.2, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.3246.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.57α = 90
b = 84.59β = 95.39
c = 107.22γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152001-12-10MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97999, 0.97980, 0.91837SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.848.6687.60.03820.24.1971229712229.14
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8559.70.2734.33.24897

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.848.6692219487487.240.159380.157380.19807RANDOM22.156
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.430.861.20.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.43
r_dihedral_angle_4_deg16.248
r_dihedral_angle_3_deg13.097
r_dihedral_angle_1_deg5.552
r_scangle_it3.206
r_scbond_it2.338
r_angle_refined_deg1.414
r_mcangle_it1.307
r_mcbond_it0.977
r_angle_other_deg0.862
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.43
r_dihedral_angle_4_deg16.248
r_dihedral_angle_3_deg13.097
r_dihedral_angle_1_deg5.552
r_scangle_it3.206
r_scbond_it2.338
r_angle_refined_deg1.414
r_mcangle_it1.307
r_mcbond_it0.977
r_angle_other_deg0.862
r_symmetry_vdw_other0.275
r_nbd_refined0.211
r_symmetry_hbond_refined0.196
r_nbd_other0.185
r_symmetry_vdw_refined0.109
r_chiral_restr0.086
r_nbtor_other0.081
r_xyhbond_nbd_refined0.021
r_bond_refined_d0.017
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8391
Nucleic Acid Atoms
Solvent Atoms937
Heterogen Atoms40

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
MLPHAREphasing
SOLVEphasing
RESOLVEmodel building
REFMACrefinement
CCP4data scaling
RESOLVEphasing