1O4W

CRYSTAL STRUCTURE OF a PIN (PILT N-TERMINUS) DOMAIN CONTAINING PROTEIN (AF0591) FROM ARCHAEOGLOBUS FULGIDUS AT 1.90 A RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION,SITTING DROP,NANODROP627730% MPD, MES buffer pH 6.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.0459.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.705α = 90
b = 63.705β = 90
c = 78.04γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315flat mirror2003-04-17MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-10.98397, 0.97922, 0.91837, 0.97855SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.931.8699.90.0525.38.8148601486048.07
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9599.90.6382.34.91058

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.931.861413172899.870.190590.188430.23508RANDOM41.843
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.050.521.05-1.57
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.23
r_dihedral_angle_4_deg15.595
r_dihedral_angle_3_deg13.39
r_dihedral_angle_1_deg5.088
r_scangle_it4.391
r_scbond_it2.797
r_mcangle_it1.454
r_angle_refined_deg1.225
r_mcbond_it0.768
r_angle_other_deg0.758
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.23
r_dihedral_angle_4_deg15.595
r_dihedral_angle_3_deg13.39
r_dihedral_angle_1_deg5.088
r_scangle_it4.391
r_scbond_it2.797
r_mcangle_it1.454
r_angle_refined_deg1.225
r_mcbond_it0.768
r_angle_other_deg0.758
r_symmetry_vdw_other0.213
r_nbd_refined0.207
r_symmetry_vdw_refined0.199
r_nbd_other0.158
r_xyhbond_nbd_refined0.146
r_symmetry_hbond_refined0.118
r_nbtor_other0.081
r_chiral_restr0.076
r_bond_refined_d0.018
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms974
Nucleic Acid Atoms
Solvent Atoms90
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
SOLVEphasing
RESOLVEmodel building
REFMACrefinement
CCP4data scaling
RESOLVEphasing