1LUX
NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.6 mM RNA, 10 mM cacodylate buffer, pH 5.6, 0.1 mM EDTA | 5.60 | 1 atm | 298 | |||
2 | DQF-COSY | 1.6 mM RNA, 10 mM cacodylate buffer, pH 5.6, 0.1 mM EDTA | 5.60 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
global fold by distance geometry. refinement by simulated annealing using the amber forcefield | 271 restraints (258 NOE-Derived, 13 h-bond), 95 dihedral angle | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations, structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | Bruker | |
2 | data analysis | Felix | 98 | Accelrys |
3 | refinement | Discover | 98 | Accelrys |