1L6O

XENOPUS DISHEVELLED PDZ DOMAIN


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.2161.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 84.733α = 90
b = 84.734β = 90
c = 123.154γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4MMAD
21x-rayMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.0000,0.9796,0.9795,0.9686ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.254.2321376

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.254.2321376112795.970.279180.276910.32316RANDOM64.2111
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.01-0.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg21.401
r_scangle_it12.449
r_dihedral_angle_1_deg8.117
r_scbond_it8.052
r_mcangle_it6.103
r_angle_refined_deg4.597
r_mcbond_it3.731
r_symmetry_vdw_refined0.386
r_nbd_refined0.349
r_chiral_restr0.313
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg21.401
r_scangle_it12.449
r_dihedral_angle_1_deg8.117
r_scbond_it8.052
r_mcangle_it6.103
r_angle_refined_deg4.597
r_mcbond_it3.731
r_symmetry_vdw_refined0.386
r_nbd_refined0.349
r_chiral_restr0.313
r_xyhbond_nbd_refined0.261
r_symmetry_hbond_refined0.225
r_bond_refined_d0.073
r_gen_planes_refined0.022
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2303
Nucleic Acid Atoms
Solvent Atoms25
Heterogen Atoms

Software

Software
Software NamePurpose
CCDSYSdata collection
HKL-2000data reduction
SOLVEphasing
REFMACrefinement
CCDSYSdata reduction
HKL-2000data scaling