1KSQ
NMR Study of the Third TB Domain from Latent Transforming Growth Factor-beta Binding Protein-1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1.7 mM [U-15N] TB3-LTBP-1 | 90% H2O/10% D2O | 5.0 | ambient | 303 | ||
2 | 2D NOESY | 1.2 mM [U-15N] TB3-LTBP-1 | 99.9% D2O | 5.0 | ambient | 303 | ||
3 | HMQC-J | 1.7 mM [U-15N] TB3-LTBP-1 | 90% H2O/10% D2O | 5.0 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | GE | OMEGA | 600 |
2 | GE | OMEGA | 750 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The structures are based on a total of 1676 restraints, 1610 NOE-derived distance constraints, 36 distance restraints for 18 hydrogen bonds, and 30 dihedral angle phi restraints. | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | 3D NOESY mixing time 150ms 2D NOESY mixing time 90ms |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure calculation | X-PLOR | 3.851 | Brunger |
2 | data analysis | NMRView | 3.1.2 | Johnson, One Moon Scientific |
3 | data analysis | Felix | 2.30 | Accelrys Software Inc. |
4 | refinement | X-PLOR | 3.10 | Brunger |